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Academic Journal

A massively parallel branch-&-bound algorithm for the balanced minimum evolution problem

Authors : Catanzaro, Daniele; Frohn, Martin; Gascuel, Olivier ...

Subjects: Combinatorial optimization; Integer programming; Parallel branch-and-bound

Source: ISSN: 0305-0548.

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Academic Journal

Fast and Accurate Maximum-Likelihood Estimation of Multi-Type Birth–Death Epidemiological Models from Phylogenetic Trees

Authors : Zhukova, Anna; Hecht, Frédéric; Maday, Yvon ...

Subjects: Birth-Death models; Ebola; Epidemiology

Source: ISSN: 1063-5157.

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Academic Journal

Robustness of Felsenstein’s Versus Transfer Bootstrap Supports With Respect to Taxon Sampling

Authors : Zaharias, Paul; Lemoine, Frédéric; Gascuel, Olivier ...

Subjects: Felsenstein’s bootstrap; phylogenetic trees; support robustness

Source: ISSN: 1063-5157.

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Academic Journal

Modeling Drug Resistance Emergence and Transmission in HIV-1 in the UK

Authors : Zhukova, Anna; Dunn, David; Gascuel, Olivier ...

Subjects: HIV-1; drug resistance mutations; ancestral character reconstruction

Source: ISSN: 1999-4915 ; Viruses ; https://hal.science/hal-04296200 ; Viruses, 2023, This article belongs to the Special Issue "HIV Epidemiology and Drug Resistance", 15 (6), pp.1244.

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Report

Accurate Detection of Convergent Mutations in Large Protein Alignments with ConDor

Authors : Morel, Marie; Lemoine, Frédéric; Zhukova, Anna ...

Subjects: molecular evolution; phylogenetics; selection

Source: https://hal.science/hal-04296479 ; 2022.

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Academic Journal

Micro-computed tomography for discriminating between different forming techniques in ancient pottery: new segmentation method and pore distribution recognition

Authors : Coli, Vanna Lisa; Gomart, Louise; Pisani, Didier, F ...

Subjects: [SHS]Humanities and Social Sciences; [MATH]Mathematics [math]; [INFO]Computer Science [cs]

Source: ISSN: 0003-813X.

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Academic Journal

ASICS: an R package for a whole analysis workflow of 1D 1H NMR spectra

Authors : Lefort, Gaëlle; Liaubet, Laurence; Canlet, Cécile ...

Subjects: [MATH]Mathematics [math]; [INFO]Computer Science [cs]; [SDV]Life Sciences [q-bio]

Source: ISSN: 1367-4803.

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Report

D.9.3 E-RIHS Scientific Strategy v. 1.0

Authors : Bertrand, Loïc; Anglos, Demetrios; Castillejo, Marta ...

Subjects: E-RIHS; Scientific Strategy; [CHIM]Chemical Sciences

Source: https://hal.science/hal-02946664 ; [Research Report] European Commission. 2020.

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Scientific project of the DIM PAMIR ; Projet scientifique du DIM PAMIR

Authors : Bertrand, Loïc; Romary, Laurent; Rouget, Isabelle ...

Subjects: [SHS]Humanities and Social Sciences; [CHIM]Chemical Sciences; [INFO]Computer Science [cs]

Source: https://hal.science/hal-04255210 ; 2022.

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First version of the E-RIHS scientific vision

Authors : Bertrand, Loïc; Charbonnel, Bénédicte; Castillejo, Marta ...

Subjects: [CHIM]Chemical Sciences; [INFO]Computer Science [cs]; [MATH]Mathematics [math]

Source: https://hal.science/hal-02138538 ; [Technical Report] D 9.1, Projet E-RIHS PP. 2018.

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